Veusz is a scientific plotting and graphing program with a graphical user interface, designed to produce publication-ready 2D and 3D plots. In addition it can be used as a module in Python for plotting. Veusz is multiplatform, running on Windows, Linux/Unix and macOS.
It supports vector and bitmap output, including PDF, Postscript, SVG and EMF.
Interestingly, the command line being great does not make the alternative fairly OK. It's much worse than that (that is an article by Ben Klemens from about a decade ago, original URL has unfortunately succumbed to linkrot, but I had it saved on my Wallabag).
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